MRIQC: individual T1w report

Summary

Subject ID: 012_ControlPre.
Date and time: 2018-05-06, 20:55.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.38921056057479997
cnr			3.307744536994336
efc			0.6241919887710484
fber			68.98210906982422
fwhm	avg		4.022476666666666
fwhm	x		3.78949
fwhm	y		4.23091
fwhm	z		4.04703
icvs	csf		0.21419742995093366
icvs	gm		0.44323862374341666
icvs	wm		0.3425639463056497
inu	med		1.2325478792190552
inu	range		0.4094424009323119
qi	1		0.0
qi	2		0.0008282269361917365
rpve	csf		22.82927810332001
rpve	gm		11.635693469918595
rpve	wm		17.116183531766353
size	x		180
size	y		256
size	z		256
snr	csf		2.8369287572772923
snr	gm		10.493379279933539
snr	total		9.002798995301559
snr	wm		13.678088948693842
snrd	csf		10.258478283548978
snrd	gm		20.264027888496564
snrd	total		20.313338831992535
snrd	wm		30.417510323932063
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	3.4666177450806774
summary	bg	mad	21.53864288330078
summary	bg	mean	68.47086334228516
summary	bg	median	61.838287353515625
summary	bg	n	2494932.0
summary	bg	p05	35.925848197937015
summary	bg	p95	125.1692371368408
summary	bg	stdv	28.434980392456055
summary	csf	k	0.17300674055742427
summary	csf	mad	123.60928344726562
summary	csf	mean	337.665283203125
summary	csf	median	337.263671875
summary	csf	n	20288.0
summary	csf	p05	147.0614311218262
summary	csf	p95	527.8788818359372
summary	csf	stdv	118.88044738769531
summary	gm	k	0.23325949821669223
summary	gm	mad	61.47722625732422
summary	gm	mean	667.3961791992188
summary	gm	median	666.2119140625
summary	gm	n	32207.0
summary	gm	p05	565.2365173339844
summary	gm	p95	775.0438537597655
summary	gm	stdv	63.48780059814453
summary	wm	k	0.8553126044935433
summary	wm	mad	68.44583892822266
summary	wm	mean	1005.130615234375
summary	wm	median	1000.023681640625
summary	wm	n	190564.0
summary	wm	p05	894.1578247070313
summary	wm	p95	1133.050634765625
summary	wm	stdv	73.11116790771484
tpm	overlap	csf	0.19148726761341095
tpm	overlap	gm	0.5133432149887085
tpm	overlap	wm	0.5348528027534485
wm2max			0.5379079381420895

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	67373f5348c0a17c22fe57da589223fc
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.