MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.38921056057479997
cnr3.307744536994336
efc0.6241919887710484
fber68.98210906982422
fwhmavg4.022476666666666
fwhmx3.78949
fwhmy4.23091
fwhmz4.04703
icvscsf0.21419742995093366
icvsgm0.44323862374341666
icvswm0.3425639463056497
inumed1.2325478792190552
inurange0.4094424009323119
qi10.0
qi20.0008282269361917365
rpvecsf22.82927810332001
rpvegm11.635693469918595
rpvewm17.116183531766353
sizex180
sizey256
sizez256
snrcsf2.8369287572772923
snrgm10.493379279933539
snrtotal9.002798995301559
snrwm13.678088948693842
snrdcsf10.258478283548978
snrdgm20.264027888496564
snrdtotal20.313338831992535
snrdwm30.417510323932063
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk3.4666177450806774
summarybgmad21.53864288330078
summarybgmean68.47086334228516
summarybgmedian61.838287353515625
summarybgn2494932.0
summarybgp0535.925848197937015
summarybgp95125.1692371368408
summarybgstdv28.434980392456055
summarycsfk0.17300674055742427
summarycsfmad123.60928344726562
summarycsfmean337.665283203125
summarycsfmedian337.263671875
summarycsfn20288.0
summarycsfp05147.0614311218262
summarycsfp95527.8788818359372
summarycsfstdv118.88044738769531
summarygmk0.23325949821669223
summarygmmad61.47722625732422
summarygmmean667.3961791992188
summarygmmedian666.2119140625
summarygmn32207.0
summarygmp05565.2365173339844
summarygmp95775.0438537597655
summarygmstdv63.48780059814453
summarywmk0.8553126044935433
summarywmmad68.44583892822266
summarywmmean1005.130615234375
summarywmmedian1000.023681640625
summarywmn190564.0
summarywmp05894.1578247070313
summarywmp951133.050634765625
summarywmstdv73.11116790771484
tpmoverlapcsf0.19148726761341095
tpmoverlapgm0.5133432149887085
tpmoverlapwm0.5348528027534485
wm2max0.5379079381420895

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum67373f5348c0a17c22fe57da589223fc
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.